mardi 24 février 2015

How to find the total number of optimal paths between two strings for global alignment

I am trying to come up with an algorithm with which I can count the total number of optimal paths for 2 given strings in case of global alignment processing using a dynamic programming table.


Since larger sequences can have numerous optimal paths, is there a more efficient way of performing this without having to specifically traceback on each possible optimal path and count them manually?


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